Conditional Inequalities and the Shortest Common Superstring Problem

نویسندگان

  • Uli Laube
  • Maik Weinard
چکیده

We investigate the shortest common superstring problem (SCSSP). As SCSSP is APX-complete it cannot be approximated within an arbitrarily small performance ratio. One heuristic that is widely used is the notorious greedy heuristic. It is known, that the performance ratio of this heuristic is at least 2 and not worse than 4. It is conjectured that the greedy heuristic’s performance ratio is in fact 2 (the greedy conjecture). Even the best algorithms introduced for SCSSP can only guarantee an upper bound of 2.5. In [11] an even stronger version of the greedy conjecture is proven for a restricted class of orders in which strings are merged. We extend these results by broadening the class for which this stronger version can be established. We also show that the Triple inequality, introduced in [11] and crucial for their results, is inherently insufficient to carry the proof for the greedy conjecture in the general case. Finally we describe how linear programming can be used to support research along this line.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

On the Greedy Superstring Conjecture

We investigate the greedy algorithm for the shortest common superstring problem. We show that the length of the greedy superstring is upper-bounded by the sum of the lengths of an optimal superstring and an optimal cycle cover, provided the greedy algorithm happens to merge the strings in a particular way. Thus, when restricting inputs correspondingly, we verify the well known greedy conjecture...

متن کامل

The Shortest Common Superstring Problem

We consider the problem of the shortest common superstring. We describe an approach to solve the problem. This approach is based on an explicit reduction from the problem to the satisfiability problem.

متن کامل

On Reoptimization of the Shortest Common Superstring Problem

In general, a reoptimization gives us a possibility to obtain a solution for a larger instance from a solution for a smaller instance. In this paper, we consider a possibility of usage of a reoptimization to solve the shortest common superstring problem.

متن کامل

Approximating the Shortest Superstring Problem Using de Bruijn Graphs

The best known approximation ratio for the shortest superstring problem is 2 11 23 (Mucha, 2012). In this note, we improve this bound for the case when the length of all input strings is equal to r, for r ≤ 7. For example, for strings of length 3 we get a 1 1 3 -approximation. An advantage of the algorithm is that it is extremely simple both to implement and to analyze. Another advantage is tha...

متن کامل

انتخاب کوچکترین ابر رشته در DNA با استفاده از الگوریتم ازدحام ذرّات

A DNA string can be supposed a very long string on alphabet with 4 letters. Numerous scientists attempt in decoding of this string. since this string is very long , a shorter section of it that have overlapping on each other will be decoded .There is no information for the right position of these sections on main DNA string. It seems that the shortest string (substring of the main DNA string) i...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Int. J. Found. Comput. Sci.

دوره 17  شماره 

صفحات  -

تاریخ انتشار 2004